Installation

Install Python

Visit the official Python website to download Python. Python 3.11 is recommended.

Install masscube

masscube is a Python package that can be installed using pip. Open terminal and run

pip install masscube

To update the package to the latest version, open terminal and run

pip install masscube --upgrade

To only install masscube for the current user, add the --user flag. This is to avoid permission issues when installing packages globally (e.g. you are not an administrator).

pip install --user masscube

Dependencies will be automatically installed. Consider creating a virtual environment if you’re working with Python on multiple projects.

dependencies = [
    "numpy>=1.24",
    "pandas>=2.2.1",
    "pyteomics==4.6.3",
    "scipy>=1.10.1",
    "tqdm>=4.66.1",
    "lxml>=4.9.3",
    "matplotlib>=3.8.2",
    "ms_entropy==1.2.2",
    "scikit-learn>=1.3.2",
    "statsmodels>=0.14.2",
    "umap-learn>=0.5.7",
]